PmiREN: Plant microRNA Encyclopedia

Bol-MIR169d

Basic info.

miRNA locus ID
Bol-MIR169d

miRNA locus accession
PmiREN002346

Organism
Brassica oleracea

Genomic location
Bol-C06 21178956 21179067 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 G     -C      T  T  T         AT         ---A   AT     TAA
  GAAAA  AGAGAA GA AT GAGCCAAAG  GACTTGCCG    CCA  GAATC   
  |||||  |||||| || || |||||||||  |||||||||    |||  |||||   A
  CTTTT  TCTCTT CT TG CTCGGTTTC  TTGAACGGC    GGT  TTTAG   
AG     CT      C  T  T         AG         CAAC   --     TCA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Bol038575	2.0	1	NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

No link
No link

Reference

>Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019

>High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013