PmiREN: Plant microRNA Encyclopedia

Bra-MIR1511

Basic info.

miRNA locus ID
Bra-MIR1511

miRNA locus accession
PmiREN002381

Organism
Brassica rapa

Genomic location
Bra-A05 22561696 22561790 +

Comments
A member of family MIR1511

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   A     G         CTT  A          A     T      A
    TCTTG TTTTGAGAT   CT CATGGTATCA AGCCA GTTATC 
    ||||| |||||||||   || |||||||||| ||||| |||||| T
    AGAAC AAAATTCTA   GA GTACCATAGT TCGGT CAATAG 
GTTC     -         AAT  A          C     C      T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.F01953.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Bra-MIR1511

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