Bra-MIR162b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAAAAGGAGTGAAAGAT      G   GC    G        C      --GGAAT     AA
                   GCTGGA GCA  GGTT ATCGATCT TTTGTG       TTTTG  
                   |||||| |||  |||| |||||||| ||||||       |||||  A
                   CGACCT CGT  CCAA TAGCTAGA AAGTAC       AAAAC  
CTAACTACTTCTCCGCTGG      A   GT    A        C      GAAAATT     AA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-943 Bra-MIR162c Bra-A02: 1323891-1324037 - Brassica rapa Bra-MIR162b Bra-A10: 17713697-17713823 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.B00273.1 1.5 1 NA
Brara.G01863.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference