Bra-MIR165a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 AAA     -TTA     T  A  A   TT      C      -     A     -CGA     AA
    GCGAT    GGGTT AG GG ATG  GTCTGG TCGAGG TCATG AGAGT    TATTT  
    |||||    ||||| || || |||  |||||| |||||| ||||| |||||    |||||   
    CGCTA    TCCAA TC CC TAC  CGGACC GGCTCT AGTAT TCTCA    ATAAA  
TTAA     CTTA     C  C  C   TT      A      T     A     AAAC     GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-128 Aly-MIR166c Aly-scaffold_6: 3626977-3627123 + Brassica rapa Bra-MIR165a Bra-A06: 19223499-19223626 +
SY-141 Aly-MIR166g Aly-scaffold_8: 21095447-21095574 + Brassica rapa Bra-MIR165a Bra-A06: 19223499-19223626 +
SY-518 Ath-MIR166g Ath-Chr5: 25504795-25504922 + Brassica rapa Bra-MIR165a Bra-A06: 19223499-19223626 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.B01017.1 0.5 NA NA
Brara.D02105.1 0.5 NA NA
Brara.I02808.1 0.5 NA NA
Brara.J01422.1 0.5 NA NA
Brara.K00217.1 0.5 NA NA
Brara.E00955.1 1.5 NA NA
Brara.F00211.1 1.5 NA NA
Brara.F01856.1 1.5 NA NA
Brara.H00179.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference