Bra-MIR168e

Basic info.

• miRNA locus ID
• Bra-MIR168e

• miRNA locus accession
• PmiREN002445

• Organism
• Brassica rapa

• Genomic location
• Bra-A08  5826219  5826358  -

• Comments
• A member of family MIR168

• Confidence level
• 

Secondary strurture and sequence

 GG    C   -TT    G      C          T     A      G CTAA    -T   CG    T
   TCAC GTC   GCTC GATTCG TTGGTGCAGG CGGGA CCAATT T    CACA  CCA  AAGT 
   |||| |||   |||| |||||| |||||||||| ||||| |||||| |    ||||  |||  |||| T
   AGTG TAG   CGAG CTAAGT AACTACGTTC GCCCT GGTTAG G    GTGT  GGT  TTCA 
TAA    C   TCC    G      T          C     A      G ACGA    TT   CG    T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >The elucidation of stress memory inheritance in Brassica rapa plants. Front Plant Sci, 2015
• >Identification and characterization of microRNAs in oilseed rape (Brassica napus) responsive to infection with the pathogenic fungus Verticillium longisporum using Brassica AA (Brassica rapa) and CC (Brassica oleracea) as reference genomes. New Phytol, 2014