Bra-MIR172g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAC        TTTG   C                   A  ---   C    T    GG   T  TTC
     GGTCGTTG    CTG TGTGGCATCATCAAGATTC CA   TCG CAGA GGAC  TGG GA   
     ||||||||    ||| ||||||||||||||||||| ||   ||| |||| ||||  ||| ||   A
     TCGGCAAC    GGC ACGTCGTAGTAGTTCTAAG GT   AGT GTCT CTTG  ACC CT   
TCTTA        TAAA   T                   A  AAA   A    -    AA   C  CCC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A00160.1 0.5 0 NA
Brara.B01045.1 0.5 NA NA
Brara.C02403.1 0.5 0 NA
Brara.G01386.1 0.5 NA NA
Brara.J01371.1 0.5 0 NA
Brara.K01270.1 0.5 0 NA
Brara.B01095.1 1.0 0 NA
Brara.G01191.1 1.0 0 NA
Brara.E00605.1 1.5 NA NA
Brara.I03764.1 1.5 NA NA
Brara.F01960.1 2.0 2 NA
Brara.G01342.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference