PmiREN: Plant microRNA Encyclopedia

Bra-MIR391b

Basic info.

miRNA locus ID
Bra-MIR391b

miRNA locus accession
PmiREN002509

Organism
Brassica rapa

Genomic location
Bra-A03 4909142 4909256 -

Comments
A member of family MIR391

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AAC          --   TT   T  C          G  C      AT  -T    GA
    TGCACATATA  GAT  GCT CG AGGAGAGATA CG CATCAC  TT  CTAA  
    ||||||||||  |||  ||| || |||||||||| || ||||||  ||  ||||   
    ACGTGTATAT  CTA  CGA GC TCCTCTCTAT GC GTAGTG  AG  GATT  
ATCT          TC   -T   T  A          G  A      GT  TC    TG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-288	Aly-MIR391	Aly-scaffold_8: 19524565-19524676 +	Brassica rapa	Bra-MIR391b	Bra-A03: 4909142-4909256 -
SY-639	Ath-MIR391	Ath-Chr5: 24293140-24293251 +	Brassica rapa	Bra-MIR391b	Bra-A03: 4909142-4909256 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.J01134.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Bra-MIR391b

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