PmiREN: Plant microRNA Encyclopedia

Bra-MIR397

Basic info.

miRNA locus ID
Bra-MIR397

miRNA locus accession
PmiREN002531

Organism
Brassica rapa

Genomic location
Bra-A10 13762087 13762214 +

Comments
A member of family MIR397

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 T       TT G  --C      C       G              T  A   --    TT    TT
  TCCTGGA  T CA   GAACAT ATTGAGT CAGCGTTGATGTGA TT CTT  ATCT  TTCA  
  |||||||  | ||   |||||| ||||||| |||||||||||||| || |||  ||||  ||||   
  AGGACTT  A GT   TTTGTA TAACTCG GTTGCAACTACATT AA GAA  TAGA  AAGT  
CT       TT -  CTT      T       -              T  C   AT    -T    TG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.B01051.1	0.5	1	NA
Brara.D02326.1	1.0	NA	NA
Brara.E01368.1	1.0	NA	NA
Brara.B00087.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Bra-MIR397

>