Bra-MIR398d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ACAAGTGGTGAAATC  A    A   T A          --AA   TT       CTTAAAA
                 TC AAGG GTG C TGAGAACACA    TCC  TGGTTTC       
                 || |||| ||| | ||||||||||    |||  |||||||       T
                 AG TTCC CAC G ACTCTTGTGT    AGG  ATCAAAG       
ATTACCTTGTCTCCTTG  C    C   T G          ATTG   -T       TTACCTA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-338 Aly-MIR398a Aly-scaffold_5: 1852492-1852613 + Brassica rapa Bra-MIR398d Bra-A09: 15707792-15707915 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.J02011.1 0.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference