Bra-MIR858a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     AT   -    AAAA T       T    T  T    -T  --T     -    --   TCT
       GAT GATC    G GGTTGGG TCGA GC AGGC  TG   CAAAG TGAG  CAA   
       ||| ||||    | ||||||| |||| || ||||  ||   ||||| ||||  |||    
       CTG CTAG    C CCGGTTC AGCT TG TCTG  GC   GTTTC ACTC  GTT   
AAAGCTC   T    ---- T       C    -  -    TT  TTT     T    TT   TAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-714 Ath-MIR858 Ath-Chr1: 26773532-26773735 - Brassica rapa Bra-MIR858a Bra-A07: 23885177-23885290 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.B01289.1 1.0 1 NA
Brara.F01146.1 1.5 2 NA
Brara.H00653.1 1.5 2 NA
Brara.B03395.1 2.0 NA NA
Brara.C01426.1 2.0 2 NA
Brara.C02366.1 2.0 2 NA
Brara.F02938.1 2.0 2 NA
Brara.F03068.1 2.0 NA NA
Brara.I00383.1 2.0 2 NA
Brara.J01046.1 2.0 NA NA
Brara.J01347.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference