Cru-MIR161

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TTAT     C   C      T    A       C         CTGT     --TAC    GC     CG
      TGCGT GAT AATGCA TGAA GTGACTA ATCGGGGCT    GATTA     TTTT  TCTCT  
      ||||| ||| |||||| |||| ||||||| |||||||||    |||||     ||||  |||||  C
      ACGTA CTA TTACGT ACTT CACTGAT TGGCCCCGA    CTAAT     AAAA  AGAGG  
TGTTCT     A   A      C    C       T         ----     TAAAC    AA     AA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-81 Aly-MIR161 Aly-scaffold_1: 24491101-24491242 + Capsella rubella Cru-MIR161 Cru-scaffold_1: 16494853-16494989 +
SY-463 Ath-MIR161 Ath-Chr1: 17825711-17825840 + Capsella rubella Cru-MIR161 Cru-scaffold_1: 16494853-16494989 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0002s0190.1 1.0 1 NA
Carub.0002s0191.1 1.0 NA NA
Carub.0002s0110.1 2.0 2 NA
Carub.0002s0210.1 2.0 2 NA
Carub.0004s0357.1 2.0 NA NA
Carub.0007s3431.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference