Cru-MIR165a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 TCTA  TC TT  -    A    A   TT      A           A   ATACA  CA   AC    AT     CA
     GC  T  CG GTTG GGGG ATG  GTCTGG TCGAGGATATT TAT     GA  CAC  GTAT  ACATA  
     ||  |  || |||| |||| |||  |||||| ||||||||||| |||     ||  |||  ||||  |||||   
     CG  A  GT CAAC CCCC TAC  CGGACC GGCTCCTATGA ATA     CT  GTG  CATA  TGTAT  
GTCTC  TT TT  A    C    C   TT      A           G   -----  -A   AA    GT     GT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-104 Aly-MIR165a Aly-scaffold_1: 449084-449219 + Capsella rubella Cru-MIR165a Cru-scaffold_1: 365526-365675 +
SY-489 Ath-MIR165a Ath-Chr1: 78912-79050 - Capsella rubella Cru-MIR165a Cru-scaffold_1: 365526-365675 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0001s2871.1 0.5 NA NA
Carub.0004s1640.1 0.5 NA NA
Carub.0007s0761.1 0.5 NA NA
Carub.0008s2137.1 0.5 NA NA
Carub.0005s2865.1 1.0 0 NA
Carub.0001s4109.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference