Cru-MIR165b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AGAGGCTATTTCC    T    A   TT      A    A           CAACACCACACACA   TTATATACTAAGATGATACGATG
               GTTG GGGG ATG  GTTTGG TCGA GATATCATATG              AGT                       
               |||| |||| |||  |||||| |||| |||||||||||              |||                       A
               CAAC CCCC TAC  CGGACC GGCT CTATGGTATAT              TAC                       
CTTCCGTAAATTGTT    T    C   TT      A    G           -------------A   GTACATGTAATTAATCATGTGTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-108 Aly-MIR165b Aly-scaffold_6: 24606423-24606600 + Capsella rubella Cru-MIR165b Cru-scaffold_6: 16124555-16124726 -
SY-492 Ath-MIR165b Ath-Chr4: 369836-370009 - Capsella rubella Cru-MIR165b Cru-scaffold_6: 16124555-16124726 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0001s2871.1 0.5 NA NA
Carub.0004s1640.1 0.5 NA NA
Carub.0007s0761.1 0.5 NA NA
Carub.0008s2137.1 0.5 NA NA
Carub.0005s2865.1 1.0 0 NA
Carub.0001s4109.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference