Cru-MIR166b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
G     T ---TATCT    C     C  TT      C    G   T  --T  A    T      T   TC     TT  --C    GT
 AGGGA C        TTTG GGGGA TG  GTCTGG TCGA GAC CT   AC CTAA ACAATC ATC  CATTA  TT   GATG  
 ||||| |        |||| ||||| ||  |||||| |||| ||| ||   || |||| |||||| |||  |||||  ||   ||||   
 TCCCT G        AAAC CCCCT AC  CGGACC GGCT CTG GA   TG GATT TGTTAG TAG  GTAGT  AG   CTAC  
      C TTATAATT    C     T  TT      A    G   C  TTT  G    -      -   TA     CT  ACT    GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-497 Ath-MIR166a Ath-Chr2: 19176108-19176281 + Capsella rubella Cru-MIR166b Cru-scaffold_5: 13180987-13181156 +
SY-786 Bol-MIR166c Bol-C08: 32995401-32995551 + Capsella rubella Cru-MIR166b Cru-scaffold_5: 13180987-13181156 +
SY-977 Bra-MIR166f Bra-A09: 37793849-37794001 + Capsella rubella Cru-MIR166b Cru-scaffold_5: 13180987-13181156 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0005s2865.1 0.0 0 NA
Carub.0001s4109.1 0.5 NA NA
Carub.0001s2871.1 1.0 NA NA
Carub.0004s1640.1 1.0 NA NA
Carub.0007s0761.1 1.0 NA NA
Carub.0008s2137.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference