Cru-MIR172a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAC        T    T  C G                ----   AAT     --   ---A         TCGTG
     AGCTACTG TTGC GT G AGCATCATCAAGATTC    ACA   CATCA  AGT    TTTATACAT     
     |||||||| |||| || | ||||||||||||||||    |||   |||||  |||    |||||||||      
     TCGGTGAC AGCG CG C TCGTAGTAGTTCTAAG    TGT   GTAGT  TCA    AAGTATGTG     
CATAT        T    T  A G                AGTA   -AT     TA   GAAC         TACGA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-244 Aly-MIR172c Aly-scaffold_3: 4586842-4586980 - Capsella rubella Cru-MIR172a Cru-scaffold_3: 3688183-3688326 -
SY-602 Ath-MIR172c Ath-Chr3: 3599771-3599911 - Capsella rubella Cru-MIR172a Cru-scaffold_3: 3688183-3688326 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0004s0952.1 0.5 NA NA
Carub.0007s0310.1 0.5 0 NA
Carub.0008s2084.1 0.5 NA NA
Carub.0008s2733.1 0.5 0 NA
Carub.0005s2161.1 1.5 NA NA
Carub.0004s2130.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference