PmiREN: Plant microRNA Encyclopedia

Cru-MIR397b

Basic info.

miRNA locus ID
Cru-MIR397b

miRNA locus accession
PmiREN002807

Organism
Capsella rubella

Genomic location
Cru-scaffold_7 11141398 11141530 +

Comments
A member of family MIR397

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGATGAGGTTTGAAT      C             T       ATTTAC      TGT    ATAC
                 GAACAT ATTGAGTGCAGCG TGATATA      TTCTTT   TCCA    
                 |||||| ||||||||||||| |||||||      ||||||   ||||    T
                 TTTGTA TAACTTGCGTTGT ACTATAT      AAGAAA   AGGT    
GAGGACTTTTAATCTTT      T             T       -ATTTA      -TT    AAGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0004s2005.1	0.5	1	NA
Carub.0004s1015.1	1.0	1	NA
Carub.0008s2072.1	1.0	NA	NA
Carub.0007s0356.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR397b

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