Cru-MIR399a

Basic info.

• miRNA locus ID
• Cru-MIR399a

• miRNA locus accession
• PmiREN002811

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_2  826623  826762  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

 ACG     -TC       C       C      A          CTTTTCCACATA            AA   TT
    TAAGC   ACTAGTT TAGGGCA TTCTCT TTGGCAGGTC            TATGTGCATCGA  CTT  
    |||||   ||||||| ||||||| |||||| ||||||||||            ||||||||||||  |||   
    ATTCG   TGGTCAA GTCCCGT GAGAGG AACCGTCCAG            ATGCATGTAGCT  GAA  
TTTA     TCT       A       T      A          ---------TAG            -A   CC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference