PmiREN: Plant microRNA Encyclopedia

Cru-MIR825

Basic info.

miRNA locus ID
Cru-MIR825

miRNA locus accession
PmiREN002818

Organism
Capsella rubella

Genomic location
Cru-scaffold_4 3064090 3064213 +

Comments
A member of family MIR825

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CACTGATTC        C     A     AG     A           AA    ---    TC
           CATCAACT GTTCA GCACC  CTCGA GAAGCGTAGCT  TTTT   ATCT  
           |||||||| ||||| |||||  ||||| |||||||||||  ||||   ||||   
           GTAGTTGA CGAGT CGTGG  GAGCT CTTCGCATCGA  AAAA   TAGA  
TAGTTTTATAC        A     A     AA     -           AA    GTT    AG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-710	Ath-MIR825	Ath-Chr2: 11159693-11159814 +	Capsella rubella	Cru-MIR825	Cru-scaffold_4: 3064090-3064213 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0001s2877.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR825

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