Esa-MIR156c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AAGTG  G   GG  T   C    A  A   A    G   -----       -G     -C   -GC  CA   AA  ---  CAAATCGAGGATACACCAGAAGCTTCCGGTGAATAAATCCTTGCTTTAGA
     TT TTG  AC GAG TGAC GA GAG GAGA CAC     AAGTAGA  CGTGG  GCT   CT  TGT  GT   CC                                                  
     || |||  || ||| |||| || ||| |||| |||     |||||||  |||||  |||   ||  |||  ||   ||                                                  T
     AA AAC  TG CTC ATTG CT CTC TTCT GTG     TTCATCT  GCACT  AAG   CT  ACT  TG   GA                                                  
  TTA  G   -A  T   -    C  A   G    G   ACACG       GA     CA   TTT  --   --  GAT  ACGAGATACAAAGGACGCTAACGCGTTTTGTTGTCAGCATCCTATATACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10003215m 0.0 0 NA
Thhalv10006058m 0.0 0 NA
Thhalv10007832m 0.0 0 NA
Thhalv10007882m 0.0 0 NA
Thhalv10011728m 0.0 0 NA
Thhalv10013892m 0.0 0 NA
Thhalv10018638m 0.0 0 NA
Thhalv10017406m 1.5 2 NA
Thhalv10022738m 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference