PmiREN: Plant microRNA Encyclopedia

Esa-MIR156e

Basic info.

miRNA locus ID
Esa-MIR156e

miRNA locus accession
PmiREN005587

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_1 3805364 3805485 -

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GAAA  C   C     ------A           -     -       A    G   CT  T   TG
    TG AAA AGAGA       AACTGACAGAA GAGAG TGAGCAC TGCA GCA  GT ATG  
    || ||| |||||       ||||||||||| ||||| ||||||| |||| |||  || |||   
    AC TTT TCTCT       TTGACTGTCTT CTCTC ACTCGTG GTGT CGT  CA TAC  
   C  -   C     CCGTCCG           T     C       C    G   TT  T   CT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-15	Aly-MIR156b	Aly-scaffold_7: 4534112-4534233 -	Eutrema salsugineum	Esa-MIR156e	Esa-scaffold_1: 3805364-3805485 -
SY-400	Ath-MIR156b	Ath-Chr4: 15074925-15075046 +	Eutrema salsugineum	Esa-MIR156e	Esa-scaffold_1: 3805364-3805485 -
SY-718	Bol-MIR156	Bol-C03: 54389745-54389867 -	Eutrema salsugineum	Esa-MIR156e	Esa-scaffold_1: 3805364-3805485 -
SY-884	Bra-MIR156e	Bra-A08: 14748884-14749006 -	Eutrema salsugineum	Esa-MIR156e	Esa-scaffold_1: 3805364-3805485 -
SY-898	Bra-MIR156k	Bra-A01: 3266796-3266917 -	Eutrema salsugineum	Esa-MIR156e	Esa-scaffold_1: 3805364-3805485 -
SY-910	Bra-MIR156t	Bra-Scaffold19799: 61328-61449 -	Eutrema salsugineum	Esa-MIR156e	Esa-scaffold_1: 3805364-3805485 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10003215m	1.0	1	NA
Thhalv10006058m	1.0	1	NA
Thhalv10007832m	1.0	1	NA
Thhalv10007882m	1.0	1	NA
Thhalv10011728m	1.0	1	NA
Thhalv10013892m	1.0	1	NA
Thhalv10016816m	1.0	1	NA
Thhalv10017406m	1.0	1	NA
Thhalv10018638m	1.0	1	NA
Thhalv10022738m	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR156e

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