Esa-MIR156i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
T   T  T      --TT    -       -                    GGCT   TT   TATT   TG
 GAG GA GAGGAA    GTGG TGACAGA AGAGAGTGAGCACACATGGT    TTC  GCA    TGA  
 ||| || ||||||    |||| ||||||| ||||||||||||||||||||    |||  |||    |||  G
 CTC CT CTCTTT    CACC ACTGTCT TCTCTCACTCGTGTGTATCG    AAG  CGT    ACT  
T   T  -      CCCC    C       A                    ----   TT   ----   TT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-29 Aly-MIR156f Aly-scaffold_6: 11884619-11884750 + Eutrema salsugineum Esa-MIR156i Esa-scaffold_6: 3821516-3821647 +
SY-417 Ath-MIR156f Ath-Chr5: 9136106-9136237 + Eutrema salsugineum Esa-MIR156i Esa-scaffold_6: 3821516-3821647 +
SY-907 Bra-MIR156q Bra-A06: 22782170-22782301 + Eutrema salsugineum Esa-MIR156i Esa-scaffold_6: 3821516-3821647 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10003215m 1.0 1 NA
Thhalv10006058m 1.0 1 NA
Thhalv10007832m 1.0 1 NA
Thhalv10007882m 1.0 1 NA
Thhalv10011728m 1.0 1 NA
Thhalv10013892m 1.0 1 NA
Thhalv10016816m 1.0 1 NA
Thhalv10017406m 1.0 1 NA
Thhalv10018638m 1.0 1 NA
Thhalv10022738m 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference