Esa-MIR159a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TTTTTAAGTGTAAA                 -      A         CA   TCAA    A   AAAT   AA     TT T     G TT    GAATT      TTGA    GA
                AAAAGGAGCTCCCTTCG TCCAAA CGAGGAGGA  AGA    AGGA AGA    AGA  TCTAA  G TCATG A  CCTC     AAGTGC    GCTT  
                ||||||||||||||||| |||||| |||||||||  |||    |||| |||    |||  |||||  | ||||| |  ||||     ||||||    ||||  A
                TTTTCCTCGAGGGAAGT AGGTTT GCTTCTCTT  TCT    TCCT TCT    TCT  AGATT  C GGTAC T  GGAG     TTCACG    CGGA  
CTCTGTTATCTTATCC                 T      -         -C   ----    C   ----   --     CT C     G TT    -AATT      ----    AG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-449 Ath-MIR159c Ath-Chr2: 18994625-18994865 + Eutrema salsugineum Esa-MIR159a Esa-scaffold_22: 1140812-1141030 +
SY-929 Bra-MIR159c Bra-A05: 916319-916553 - Eutrema salsugineum Esa-MIR159a Esa-scaffold_22: 1140812-1141030 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10025350m 1.5 1 NA
Thhalv10006475m 2.0 1 NA
Thhalv10013018m 2.0 NA NA
Thhalv10020864m 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference