Esa-MIR164b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   GCG      A     CAC       A  CA             G  -ATAAAT  AACAC
      GGTGAG AGCTC   GTTGGAG AG  GGGCACGTGCAAA CA       CA     
      |||||| |||||   ||||||| ||  ||||||||||||| ||       ||     G
      CCACTC TCGAG   CAACCTC TC  CTCGTGCACGTTT GT       GT     
TGGTTT      C     -TA       C  CC             G  GTACTCT  CTAAA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-946 Bra-MIR164a Bra-A05: 199663-199779 - Eutrema salsugineum Esa-MIR164b Esa-scaffold_22: 1698371-1698492 +
SY-955 Bra-MIR164e Bra-A04: 21524409-21524525 + Eutrema salsugineum Esa-MIR164b Esa-scaffold_22: 1698371-1698492 +
SY-1214 Cru-MIR164a Cru-scaffold_4: 14858719-14858835 + Eutrema salsugineum Esa-MIR164b Esa-scaffold_22: 1698371-1698492 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10004550m 0.5 1 NA
Thhalv10014081m 0.5 1 NA
Thhalv10011659m 1.0 1 NA
Thhalv10013863m 1.0 1 NA
Thhalv10021186m 1.0 1 NA
Thhalv10021297m 1.0 1 NA
Thhalv10027326m 1.5 2 NA
Thhalv10004583m 2.0 2 NA
Thhalv10021393m 2.0 2 NA
Thhalv10027479m 2.0 2 NA
Thhalv10027874m 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference