PmiREN: Plant microRNA Encyclopedia

Esa-MIR167c

Basic info.

miRNA locus ID
Esa-MIR167c

miRNA locus accession
PmiREN005619

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_17 630506 630626 +

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CAC     -    ---G      A           G        AAA       -C  ---  GCT
   GGTGC ACCA    CATCTG TGAAGCTGCCA CATGATCT   CTTCTCT  TC   TC   
   ||||| ||||    |||||| ||||||||||| ||||||||   |||||||  ||   ||    
   CTACG TGGT    GTGGAC ACTTTGATGGT GTACTAGA   GAAGGGA  AG   AG   
  A     C    ATTA      C           -        CTA       CT  TTT  ATC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-989	Bra-MIR167c	Bra-A09: 12549145-12549274 -	Eutrema salsugineum	Esa-MIR167c	Esa-scaffold_17: 630506-630626 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10011887m	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR167c

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