Esa-MIR396b

Basic info.

• miRNA locus ID
• Esa-MIR396b

• miRNA locus accession
• PmiREN005656

• Organism
• Eutrema salsugineum

• Genomic location
• Esa-scaffold_18  2696056  2696216  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

TG A       ----     A                    A   T      CA      TTT     -T  AACCAAAACAAC
  A GATCCTG    GTCAT TTTTTCCACAGCTTTCTTGA CTT CTTTTT  TTTCCA   TGTTA  TG            
  | |||||||    ||||| |||||||||||||||||||| ||| ||||||  ||||||   |||||  ||            T
  T TTGGGAC    CAGTA AAAAGGGTGTCGAAAGAACT GAA GAAAAA  AAAGGT   ACAAT  AC            
   C       TAAA     C                    C   -      AA      CTT     CT  AATATATAAAAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference