PmiREN: Plant microRNA Encyclopedia

Esa-MIR398a

Basic info.

miRNA locus ID
Esa-MIR398a

miRNA locus accession
PmiREN005657

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_6 6956474 6956595 -

Comments
A member of family MIR398

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

          T  C  AATC       A     A             CCTCTG     CTTAA  TT
      CAGG GG GA    TCAAAGG GTGAT TGAGAACACAGAT      GTTTC     GA  
      |||| || ||    ||||||| ||||| |||||||||||||      |||||     ||   
      GTCC CC CT    AGTTTCC CACTG ACTCTTGTGTTTG      CAAAG     CT  
TACCTT    -  T  ---A       C     G             TGCTAA     --TCA  TT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-340	Aly-MIR398a	Aly-scaffold_5: 1852492-1852613 +	Eutrema salsugineum	Esa-MIR398a	Esa-scaffold_6: 6956474-6956595 -
SY-685	Ath-MIR398a	Ath-Chr2: 1040931-1041051 +	Eutrema salsugineum	Esa-MIR398a	Esa-scaffold_6: 6956474-6956595 -
SY-1257	Cru-MIR398a	Cru-scaffold_5: 996451-996567 +	Eutrema salsugineum	Esa-MIR398a	Esa-scaffold_6: 6956474-6956595 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR398a

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