Esa-MIR398b

Basic info.

• miRNA locus ID
• Esa-MIR398b

• miRNA locus accession
• PmiREN005658

• Organism
• Eutrema salsugineum

• Genomic location
• Esa-scaffold_2  4759541  4759674  +

• Comments
• A member of family MIR398

• Confidence level
• 

Secondary strurture and sequence

AAA     T    ---    A     TA   A            CGCAATCAAC  C      G   CCA
   GGTAG GGAA   CTCG CAGGG  GAC TGAGAACACATG          GG TGTAAT ATG   
   ||||| ||||   |||| |||||  ||| ||||||||||||          || |||||| |||    
   CCATC CTTT   GAGT GTCCC  CTG ACTCTTGTGTAC          CT ACATTA TAC   
 CG     T    CTC    C     CA   G            --TTTTCTCT  A      G   TGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference