PmiREN: Plant microRNA Encyclopedia

Esa-MIR5718

Basic info.

miRNA locus ID
Esa-MIR5718

miRNA locus accession
PmiREN005664

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_11 3440943 3441198 -

Comments
A member of family MIR5718

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

               T     TAT         T    -           A       A                           G    C   C     CA                C    -    -  TGT
                ACTGT   TCTTGTTCT GGTT GGTTCTGAACA CTTAGTG TGCTTTGTAATGGAGGCATAATGATAT TCAG AGA TAGAA  AGCCGTTGATATGCCT TTGA TAGC CA   
                |||||   ||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||| |||||  |||||||||||||||| |||| |||| ||   T
                TGACG   AGAACAAGA CCAA CCAAGACTTGT GAATCAC ACGAGACATTACCTCCGTGTTGCTATA AGTC TCT ATCTT  TTGGCAACTATACGGA AACT ATTG GT   
TAGTCTAGACACAAGT     ---         C    A           C       G                           G    C   A     CC                C    C    T  CTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10022673m	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR5718

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