PmiREN: Plant microRNA Encyclopedia

Esa-MIRN1020

Basic info.

miRNA locus ID
Esa-MIRN1020

miRNA locus accession
PmiREN005670

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_35 24538 24647 +

Comments
A member of family MIRN1020

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GACTCCGATTTCTATC   A  -T       CAA    -    -------------    GT
                  TCT TG  AAACGGA   TCAC GACT             AGGT  
                  ||| ||  |||||||   |||| ||||             ||||  A
                  AGA AC  TTTGCCT   AGTG TTGG             TCCG  
GGTAGTCTCTGTAAGTGT   A  TT       --C    G    ATTATGCGAGACT    AA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10029165m	1.5	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIRN1020

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