Mac-MIR159e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
                 ATT  GC          CCTGT       -    T   TT   TG   -   CG    G   T      G TT    CT    A  C  T       TCTT      G GG G -A  AGAG
                    GA  TAGAGCTCCC     GTCCAGA AGAG GTC  GGA  GTG GAT  AGCT CTG GTCATG A  CCAT  GCCT TC CA GGATATA    GCTACC A  C T  CT    
                    ||  ||||||||||     ||||||| |||| |||  |||  ||| |||  |||| ||| |||||| |  ||||  |||| || || |||||||    |||||| |  | |  ||     
                    CT  ATCTCGAGGG     TAGGTTT TTTC TAG  CCT  CGC TTA  TCGA GAC CAGTAC T  GGTA  CGGA AG GT TTTGTGT    CGATGG T  G A  GA    
CCTCTTTTCTTCTTACAGAC  AC          -AAGT       G    -   -T   TA   A   CG    G   C      G TC    TT    C  A  -       ----      G AG G GA  GGTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr1T05300_001 NA NA 2 (1)
GSMUA_Achr1T01660_001 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference