Mac-MIR160a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    AGAAGAGGTGAAAT  AC     C       C         C     TC AC       ATAC
                  GG  TGTGC TGGCTCC TGCATGCCA TCGTA  G  GCCAATC    
                  ||  ||||| ||||||| ||||||||| |||||  |  |||||||    C
                  CC  ATACG ACCGAGG GTGTGCGGT GGCGT  C  CGGTTAG    
CTCTCTCTCTCTCTCTCT  --     A       A         C     -- AA       GCAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr4T15610_001 NA NA 0 (1)
GSMUA_Achr6T27830_001 NA NA 2 (1)
GSMUA_Achr2T17330_001 0.0 0 NA
GSMUA_Achr6T18900_001 0.0 0 NA
GSMUA_Achr9T29480_001 0.0 0 NA
GSMUA_Achr10T04600_001 1.0 0 NA
GSMUA_Achr4T18240_001 1.0 NA NA
GSMUA_Achr5T03960_001 1.0 NA NA
GSMUA_Achr5T14630_001 1.0 1 NA
GSMUA_Achr5T18540_001 1.0 NA NA
GSMUA_Achr8T18930_001 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference