PmiREN: Plant microRNA Encyclopedia

Mac-MIR162a

Basic info.

miRNA locus ID
Mac-MIR162a

miRNA locus accession
PmiREN012025

Organism
Musa acuminata

Genomic location
Mac-chr4 8193921 8194087 -

Comments
A member of family MIR162

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TCGCGAATCGAGTGATC      C    C            TC    T   C    TGGTCTG     TGGT      TTT  TCA
                   TCTGGG GCAG GGTTTATCGATC  TTCC GGC TTGT       TTTCG    GGTGGG   GA   
                   |||||| |||| ||||||||||||  |||| ||| ||||       |||||    ||||||   ||    
                   AGACCT CGTC CCAAATAGCTGG  AAGG TCG AACA       GGAGT    TCGTTC   CT   
TCTACCTACCTACGCCTTC      A    T            CT    -   A    -----TG     -TTT      TTT  TTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr4T04730_001	NA	NA	2 (1)
GSMUA_Achr2T19780_001	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR162a

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