PmiREN: Plant microRNA Encyclopedia

Mac-MIR162c

Basic info.

miRNA locus ID
Mac-MIR162c

miRNA locus accession
PmiREN012027

Organism
Musa acuminata

Genomic location
Mac-chr3 9020589 9020737 -

Comments
A member of family MIR162

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

          AAA    AA   TGATGT     C    C            TT    TC  C    TGGA     -       T
             TGAA  AGG      CTGGA GCAG GGTTTATCGATC  TTCC  GC TTGT    TTTGG TTCTGAT 
             ||||  |||      ||||| |||| ||||||||||||  ||||  || ||||    ||||| ||||||| T
             ACTT  TCC      GGCCT CGTC CCAAATAGCTGG  AAGG  CG AACG    AGGCT AGGGCTG 
CCGTTGTCCCTAA    --   ------     A    T            CT    -T  A    TGGG     T       G

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr2T19780_001	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR162c

>