PmiREN: Plant microRNA Encyclopedia

Mac-MIR166f

Basic info.

miRNA locus ID
Mac-MIR166f

miRNA locus accession
PmiREN012049

Organism
Musa acuminata

Genomic location
Mac-chr1 12155178 12155295 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

            TAATTT   A        TT      C        A    --C    GTTTCT
      AGCTTT      TTG GGGGAATG  GTCTGG TCGAGGCC TCAT   GATC      
      ||||||      ||| ||||||||  |||||| |||||||| ||||   ||||       
      TCGAGA      GAC CCCCTTAC  CGGACC GGCTCTGG AGTG   CTAG      
TTACCT      ----CT   C        TT      A        A    TAC    ACGCTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr3T23790_001	NA	NA	2 (1)
GSMUA_Achr8T23080_001	NA	NA	2 (1)
GSMUA_AchrUn_randomT06140_001	NA	NA	2 (1)

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR166f

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