Mac-MIR170a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   C        --TTTCACA               T          AGA        GATGC
 GA GGTGCTTG         AGAGGTATTGGCGTG CTCAATCCGA   CATGGTTG     
 || ||||||||         ||||||||||||||| ||||||||||   ||||||||      
 CT TCACGAAC         TCTCTATAACTGCGC GAGTTAGGTT   GTACCGAT     
A  -        CTCACTTCC               C          AAG        ACAGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr3T29970_001 2.5 2 0 (1)
GSMUA_Achr4T07190_001 2.5 2 0 (1)
GSMUA_Achr1T05940_001 1.0 0 2 (1)
GSMUA_Achr5T20860_001 1.0 NA NA
GSMUA_Achr6T36740_001 1.0 0 NA
GSMUA_Achr8T11160_001 1.0 NA NA
GSMUA_Achr11T04360_001 1.5 NA NA
GSMUA_Achr5T02940_001 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference