Mac-MIR172d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AGCA       -----     G         C           A    -GATT   C
    GTTGGTC     TTTGT GGTGTGGCA CATCAAGATTC CATG     CGG 
    |||||||     ||||| ||||||||| ||||||||||| ||||     ||| C
    TAATCAG     AAACA CTACGTCGT GTAGTTCTAAG GTAC     GCC 
   C       TACAC     G         A           A    ATGTT   G

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr10T03230_001 0.5 0 NA
GSMUA_Achr11T23870_001 0.5 0 NA
GSMUA_Achr5T07270_001 0.5 0 NA
GSMUA_Achr5T29290_001 0.5 NA NA
GSMUA_Achr6T33140_001 0.5 0 NA
GSMUA_Achr6T34420_001 0.5 0 NA
GSMUA_Achr9T03060_001 0.5 NA NA
GSMUA_Achr9T04270_001 0.5 0 NA
GSMUA_Achr1T09830_001 1.5 0 NA
GSMUA_Achr4T06110_001 1.5 0 NA
GSMUA_Achr4T12860_001 1.5 NA NA
GSMUA_Achr8T18550_001 1.5 0 NA
GSMUA_Achr8T21030_001 1.5 0 NA
GSMUA_AchrUn_randomT16200_001 1.5 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference