Mac-MIR172g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAC     ATGT              C           A   -----   CT    TA
     AGTCG    TTGCCGGTGTAGCA CATCAAGATTC CAT     GTA  GAGT  
     |||||    |||||||||||||| ||||||||||| |||     |||  ||||   
     TCAGC    AACGGTTACGTCGT GTAGTTCTAAG GTA     CGT  CTCG  
TAGTA     GAAT              A           G   AACGT   CT    AT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr2T20710_001 NA NA 0 (1)
GSMUA_Achr2T16530_001 NA NA 2 (1)
GSMUA_Achr5T03620_001 NA NA 2 (1)
GSMUA_Achr9T08960_001 NA 2 2 (1)
GSMUA_Achr1T09830_001 0.5 0 NA
GSMUA_Achr4T06110_001 0.5 0 NA
GSMUA_Achr4T12860_001 0.5 NA NA
GSMUA_Achr8T18550_001 0.5 0 NA
GSMUA_Achr8T21030_001 0.5 0 NA
GSMUA_Achr10T03230_001 1.0 0 NA
GSMUA_Achr11T23870_001 1.0 0 NA
GSMUA_Achr5T07270_001 1.0 0 NA
GSMUA_Achr5T29290_001 1.0 NA NA
GSMUA_Achr6T33140_001 1.0 0 NA
GSMUA_Achr6T34420_001 1.0 0 NA
GSMUA_Achr9T03060_001 1.0 NA NA
GSMUA_Achr9T04270_001 1.0 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference