Mac-MIR172k

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
      CA  CGG       G C                   A  A   -CCC   CC
    AG  GC   TGTTTGC G TGTGGCATCATCAAGATTC CA GGA    GAT  
    ||  ||   ||||||| | ||||||||||||||||||| || |||    |||   
    TC  CG   ACAAACG C ACGTCGTAGTAGTTCTAAG GT CCT    CTG  
CAAA  AG  --A       A T                   A  A   CCTC   CC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr10T03230_001 0.5 0 NA
GSMUA_Achr11T23870_001 0.5 0 NA
GSMUA_Achr5T07270_001 0.5 0 NA
GSMUA_Achr5T29290_001 0.5 NA NA
GSMUA_Achr6T33140_001 0.5 0 NA
GSMUA_Achr6T34420_001 0.5 0 NA
GSMUA_Achr9T03060_001 0.5 NA NA
GSMUA_Achr9T04270_001 0.5 0 NA
GSMUA_Achr1T09830_001 1.5 0 NA
GSMUA_Achr4T06110_001 1.5 0 NA
GSMUA_Achr4T12860_001 1.5 NA NA
GSMUA_Achr8T18550_001 1.5 0 NA
GSMUA_Achr8T21030_001 1.5 0 NA
GSMUA_AchrUn_randomT16200_001 1.5 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference