Mac-MIR319c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
                 T TTT   A                 CC      -  TTT       TT    C  -  G   AC           AA    C     ATAT   G  TGCTCGGTTCTCTACAGTTCGT
              GTG G   GAG GAGCTTCCTTCGGTCCA  CATGGA TG   AAGGGGG  GAAT AG CT CCG  TCATTCATTCG  CACA AGTAG    GAA TG                      
              ||| |   ||| |||||||||||||||||  |||||| ||   |||||||  |||| || || |||  |||||||||||  |||| |||||    ||| ||                       
              TAC C   CTC CTCGAGGGAAGTCAGGT  GTACCT AC   TTCTCTT  CTTA TC GA GGC  AGTAAGTGAGT  GTGT TCATC    GGT TT                      
TTTTTGAAACTTTC   T CTT   C                 TC      T  --C       -T    -  A  G   GT           AA    A     ----   A  AGGCTTTCGAAAGTAGACGACG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr10T29280_001 1.5 2 NA
GSMUA_Achr1T17150_001 1.5 2 NA
GSMUA_Achr7T21560_001 1.5 2 NA
GSMUA_AchrUn_randomT15100_001 1.5 2 NA
GSMUA_Achr9T12880_001 2.0 NA NA
GSMUA_Achr9T24770_001 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference