PmiREN: Plant microRNA Encyclopedia

Mac-MIR390a

Basic info.

miRNA locus ID
Mac-MIR390a

miRNA locus accession
PmiREN012161

Organism
Musa acuminata

Genomic location
Mac-chr11 23542024 23542143 -

Comments
A member of family MIR390

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AA    T            A          G          -A        TA     TT
     AGTA GGAAGAATCTGT AAGCTCAGGA GGATAGCGCC  TGGGTAAG  GGAAC  
     |||| |||||||||||| |||||||||| ||||||||||  ||||||||  |||||   
     TCAT CCTTCTTGGGTA TTTGAGTCCT TCTATCGCGG  ATCTGTTT  TCTTG  
GCACC    -            C          A          AG        -G     TG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr1T17650_001	5.0	NA	0 (1)

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR390a

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