Mac-MIR393f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GCCT      CC    A C                 T      CA   T  CT T TC  TCTCTCTCT
      GTGGCT  AGGA G ATCCAAAGGGATCGCAT GATCCA  CTC CT  C C  TC         
      ||||||  |||| | ||||||||||||||||| ||||||  ||| ||  | |  ||         C
      TACCGA  TCCT C TAGGTTTTCCTAGCGTA CTAGGT  GAG GA  G G  AG         
GTACTT      CT    C C                 -      TC   C  TT T CT  CCTACCTAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr10T12000_001 1.0 NA NA
GSMUA_Achr3T23850_001 1.0 NA NA
GSMUA_Achr5T26930_001 1.0 NA NA
GSMUA_Achr6T08000_001 1.0 NA NA
GSMUA_Achr6T16510_001 1.0 NA NA
GSMUA_Achr6T20580_001 1.0 NA NA
GSMUA_Achr9T01140_001 1.0 NA NA
GSMUA_AchrUn_randomT10710_001 1.0 NA NA
GSMUA_Achr6T09760_001 1.5 2 NA
GSMUA_Achr10T10180_001 2.0 NA NA
GSMUA_Achr1T22350_001 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference