Mac-MIR396k

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    CC      A  A     CTC       GC           G  A   ATC         A   -------       G TACTCCTCAAAAGAGAGAA
      AAGATC TG TCATG   TTCCACG  TTTCTTGAACT TG GCT   TTTGCTTCC CTG       CTTTCTC T                   
      |||||| || |||||   |||||||  ||||||||||| || |||   ||||||||| |||       ||||||| |                   A
      TTCTAG AC GGTAC   AGGGTGC  AAAGAACTTGA AC CGA   AAGTGGAGG GGC       TCTATAT A                   
GAGATT      -  -     AAA       GT           A  G   -CT         A   ATAAACA       - TATATATATAGAGAGAGAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr4T15340_001 NA NA 2 (1)
GSMUA_Achr1T02370_001 1.5 1 NA
GSMUA_Achr6T31010_001 1.5 1 NA
GSMUA_Achr10T25680_001 2.0 NA NA
GSMUA_Achr2T06220_001 2.0 NA NA
GSMUA_Achr7T00440_001 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference