Mac-MIR396o

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 AGA     -           C            C      G     -----   - -  TC
    TGGCT CTCTATGTAGT TTCCACAGCTTT TTGAAC GCAGT     CAT C CC  
    ||||| ||||||||||| |||||||||||| |||||| |||||     ||| | ||  G
    ACCGA GAGGTGCATTA AGGGTGTCGAAA AACTTG CGTTA     GTA G GG  
AGTA     A           A            T      A     ACCCT   C T  TA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr3T10970_001 NA NA 2 (1)
GSMUA_Achr6T31010_001 1.0 1 NA
GSMUA_Achr2T06220_001 1.5 NA NA
GSMUA_Achr7T00440_001 1.5 NA NA
GSMUA_Achr10T18020_001 2.0 NA NA
GSMUA_Achr4T04350_001 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference