Mac-MIR396q

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TCAAAGATCGCCGG      C    CA                G   ------     GTAA    GTGT
                CATGTT TCCA  GGCTTTCTTGAACTGT AAC      TATCT    TCCT    
                |||||| ||||  |||||||||||||||| |||      |||||    ||||    G
                GTACAA AGGT  CTGAAAGAACTTGACA TTG      GTGGA    AGGA    
TGACCCTTTCTACACA      A    TC                G   TCTCAG     -AGG    GTCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr2T15320_001 NA NA 0 (1)
GSMUA_Achr6T29950_001 NA NA 0 (1)
GSMUA_Achr11T10100_001 NA NA 2 (1)
GSMUA_Achr10T06370_001 1.0 0 NA
GSMUA_Achr1T21940_001 1.0 0 NA
GSMUA_Achr1T23840_001 1.0 0 NA
GSMUA_Achr6T01270_001 1.0 0 NA
GSMUA_Achr8T30640_001 1.0 0 NA
GSMUA_AchrUn_randomT04320_001 1.0 0 NA
GSMUA_Achr11T01870_001 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference