Mac-MIR396r

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
      -GC     T   GA    C      C                 G   TCGTGC     TCACTGGTCTCCCTCCTCTTCTC
   GTT   GGGAT CTG  CGTG TTTCCA AGGCTTTCTTGAACCGT AAC      AGGCT                       
   |||   ||||| |||  |||| |||||| ||||||||||||||||| |||      |||||                       A
   CAG   TTCTA GAC  GCAC AAAGGT TCTGAAAGAACTTGGTA TTG      GGAAG                       
TAG   ACA     -   -A    A      T                 G   ----TT     AAGGAGCCCGAACGTGGCTTCTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr6T27880_001 1.5 NA NA
GSMUA_Achr10T11420_001 2.0 NA NA
GSMUA_Achr1T27000_001 2.0 1 NA
GSMUA_Achr2T06050_001 2.0 NA NA
GSMUA_Achr3T15140_001 2.0 1 NA
GSMUA_Achr4T32310_001 2.0 1 NA
GSMUA_Achr5T22990_001 2.0 NA NA
GSMUA_Achr7T27480_001 2.0 NA NA
GSMUA_Achr8T26530_001 2.0 NA NA
GSMUA_AchrUn_randomT15490_001 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference