Mac-MIR397

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GACCT   --          C    A           A     --A    GT    CTGAT
     GGA  TCGAAGGCAT ATTG GTGCAGCGTTG TGAGA   TCCA  TTCC     
     |||  |||||||||| |||| ||||||||||| |||||   ||||  ||||      
     TCT  AGCTTCCGTA TAAC CACGTCGCAAC ACTTT   GGGT  AAGG     
AAGGT   GC          A    C           C     CGG    AC    ATAAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr1T13190_001 3.5 NA 2 (1)
GSMUA_Achr4T00820_001 NA NA 2 (1)
GSMUA_Achr2T02980_001 0.0 0 NA
GSMUA_Achr9T03350_001 0.0 NA NA
GSMUA_Achr2T16380_001 1.0 1 NA
GSMUA_Achr6T34080_001 1.0 1 NA
GSMUA_Achr8T20780_001 1.0 NA NA
GSMUA_Achr9T03380_001 1.0 1 NA
GSMUA_Achr11T24220_001 1.5 1 NA
GSMUA_Achr3T15320_001 1.5 2 NA
GSMUA_Achr6T33600_001 1.5 2 NA
GSMUA_Achr6T33870_001 1.5 1 NA
GSMUA_Achr6T33880_001 1.5 2 NA
GSMUA_Achr9T03700_001 1.5 2 NA
GSMUA_Achr9T28310_001 1.5 1 NA
GSMUA_Achr11T09830_001 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference