PmiREN: Plant microRNA Encyclopedia

Mac-MIR398

Basic info.

miRNA locus ID
Mac-MIR398

miRNA locus accession
PmiREN012205

Organism
Musa acuminata

Genomic location
Mac-chr11 18801272 18801402 -

Comments
A member of family MIR398

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   ACA   GA        AA    A        C  C     G    ACTACGACT   GGCCGGTTTCTG
      GGG  GGAGTTCC  CAGG GCGACCTG GA CACAT CGCC         CCG            
      |||  ||||||||  |||| |||||||| || ||||| ||||         |||            C
      CCC  CCTCGAGG  GTCC CGCTGGAC CT GTGTA GTGG         GAC            
TCAACG   -A        AC    C        T  T     -    ---------   GGTTTAGTTTGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr9T07220_001	NA	NA	0 (1)
GSMUA_Achr2T02380_001	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR398

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