Mac-MIR408

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
              -   C    GCAAGA      C       A        T    T        -  GT
       GGGAGGG AGG GGGC      CGGGGA GAGGTAG GCATGGGA GGGG CAGAAACA GA  
       ||||||| ||| ||||      |||||| ||||||| |||||||| |||| |||||||| ||   
       CCCTCCC TTC CTCG      GTCCCT CTCCGTC CGTACCTT TCCC GTCTTTGT CT  
TGTCGTT       C   T    ------      T       A        -    -        G  GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr8T05200_001 5.0 2 2 (1)
GSMUA_Achr10T18040_001 1.5 1 NA
GSMUA_Achr8T23110_001 1.5 0 NA
GSMUA_Achr10T11270_001 2.0 1 NA
GSMUA_Achr2T06770_001 2.0 NA NA
GSMUA_Achr2T11880_001 2.0 2 NA
GSMUA_Achr4T07190_001 2.0 0 NA
GSMUA_Achr6T17010_001 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference