PmiREN: Plant microRNA Encyclopedia

Mac-MIR535d

Basic info.

miRNA locus ID
Mac-MIR535d

miRNA locus accession
PmiREN012224

Organism
Musa acuminata

Genomic location
Mac-chr6 28037791 28037913 +

Comments
A member of family MIR535

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      CA   -   C    -               A        C   C  C  C     CCGG
  TTTG  TGA GCG GACT GGTTGACAACGAGAG GAGCACGC GGT CG GG CCATG    
  ||||  ||| ||| |||| ||||||||||||||| |||||||| ||| || || |||||     
  AGAC  ACT CGC TTGG CCAACTGTTGTTCTT CTCGTGCG TCA GT CC GGTAC    
AC    -C   A   -    T               C        A   T  -  T     CTTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr10T28970_001	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR535d

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