PmiREN: Plant microRNA Encyclopedia

Mac-MIR535e

Basic info.

miRNA locus ID
Mac-MIR535e

miRNA locus accession
PmiREN012225

Organism
Musa acuminata

Genomic location
Mac-chr8 223983 224106 +

Comments
A member of family MIR535

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  C   A   -T  -AT   T   T   A                C   - -          - GG
   TGA GGT  GC   GCG GGT GAC ACGAGAGAGAGCACGC GGT C CGCAATCATG C  
   ||| |||  ||   ||| ||| ||| |||||||||||||||| ||| | |||||||||| |  G
   GCT CCG  CG   TGT CCA CTG TGCTCTTTCTCGTGTG CCA G GTGTTGGTAC G  
AGC   C   CT  CTC   -   -   C                A   T T          C GC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr10T28970_001	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR535e

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